Publications
- (2001). DNA damage control by novel DNA polymerases: Translesion replication and mutagenesis. Journal of Biological Chemistry. 276:(28)25639-25642.
- (2009). Erratum: Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals (The EMBO Journal (2009) 28 (992) DOI: 10.1038/emboj.2009.72). EMBO Journal. 28:(7)992.
- (2024). Hypoxia-dependent recruitment of error-prone DNA polymerases to genome replication. Oncogene. 44:(1)42-49.
- (2007). Novel molecular targets for risk identification: DNA repair enzyme activities. Cancer Biomarkers. 3:(3)129-133.
- (2005). Repair of the oxidative DNA damage 8-oxoguanine as a biomarker for lung cancer risk. Cancer Biomarkers. 1:(2-3)201-205.
- (1998). The mutagenesis proteins UmuD and UmuC prevent lethal frameshifts while increasing base substitution mutations. Molecular Cell. 2:(2)191-199.
- (2021). Recurrent deletions in clonal hematopoiesis are driven by microhomology-mediated end joining. Nature Communications. 12:(1)
- (2021). Improved sensitivity, safety, and rapidity of COVID-19 tests by replacing viral storage solution with lysis buffer. PLoS ONE. 16:(3 March)
- (2021). TENT4A Non-Canonical Poly(A) Polymerase Regulates DNA-Damage Tolerance via Multiple Pathways That Are Mutated in Endometrial Cancer. International Journal of Molecular Sciences. 22:(13)
- (2020). Multi-center nationwide comparison of seven serology assays reveals a SARS-CoV-2 non-responding seronegative subpopulation. EClinicalMedicine. 29-30.
- (2010). Insight into the Molecular Mechanism of Translesion DNA Synthesis in Human Cells using Probes with Chemically Defined DNA Lesions. . 381-397.
- (2009). Translesion DNA synthesis-assisted non-homologous end-joining of complex double-strand breaks prevents loss of DNA sequences in mammalian cells. Nucleic Acids Research. 37:(20)6737-6745.
- (2004). Lesion Bypass by Human DNA Polymerase μ Reveals a Template-dependent, Sequence-independent Nucleotidyl Transferase Activity. Journal of Biological Chemistry. 279:(2)859-865.
- (2000). Translesion replication by DNA polymerase β is modulated by sequence context and stimulated by fork-like flap structures in DNA. Biochemistry. 39:(2)397-405.
- (2000). Translesion replication by DNA polymerase δ depends on processivity accessory proteins and differs in specificity from DNA polymerase β. Biochemistry. 39:(2)348-355.
- (1998). Reversible induction of ATP synthesis by DNA damage and repair in Escherichia coli: In vivo NMR studies. Journal of Biological Chemistry. 273:(46)30232-30238.
- (2022). Author Correction: Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability (Genome Biology, (2018), 19, 1, (37), 10.1186/s13059-018-1401-9). Genome Biology. 23.
- (2016). In vivo evidence for translesion synthesis by the replicative DNA polymerase δ. Nucleic Acids Research. 44:(15)7242-7250.
- (2015). Development of APE1 enzymatic DNA repair assays: Low APE1 activity is associated with increase lung cancer risk. Carcinogenesis. 36:(9)982-991.
- (2015). DNA sequence context greatly affects the accuracy of bypass across an ultraviolet light 6-4 photoproduct in mammalian cells. Mutation research. 780:71-76.
- (2014). Low integrated DNA repair score and lung cancer risk. Cancer Prevention Research. 7:(4)398-406.
- (2012). N-methylpurine DNA glycosylase and OGG1 DNA repair activities: Opposite associations with lung cancer risk. Journal of the National Cancer Institute. 104:(22)1765-1769.
- (2011). PCNA ubiquitination is important, but not essential for translesion DNA synthesis in mammalian cells. PLoS Genetics. 7:(9)
- (2009). DNA polymerase ζ cooperates with polymerases κ and ι in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients. Proceedings of the National Academy of Sciences of the United States of America. 106:(28)11552-11557.
- (2009). Separate domains of Rev1 mediate two modes of DNA damage bypass in mammalian cells. Molecular and Cellular Biology. 29:(11)3113-3123.
- (2008). Reduced efficiency and increased mutagenicity of translesion DNA synthesis across a TT cyclobutane pyrimidine dimer, but not a TT 6-4 photoproduct, in human cells lacking DNA polymerase η. DNA Repair. 7:(10)1636-1646.
- (2008). Analysis of Strand Transfer and Template Switching Mechanisms of DNA Gap Repair by Homologous Recombination in Escherichia coli: Predominance of Strand Transfer. Journal of Molecular Biology. 381:(4)803-809.
- (2006). p53 and p21 Regulate Error-Prone DNA Repair to Yield a Lower Mutation Load. Molecular Cell. 22:(3)407-413.
- (2006). Keeping mammalian mutation load in check: Regulation of the activity of error-prone DNA polymerases by p53 and p21. Cell Cycle. 5:(17)1918-1922.
- (2004). Quantitative analysis of translesion DNA synthesis across a benzo[a]pyrene-guanine adduct in mammalian cells: The role of DNA polymerase. Journal of Biological Chemistry. 279:(51)53298-53305.
- (2002). Error-free recombinational repair predominates over mutagenic translesion replication in E. Coli. Molecular Cell. 10:(4)917-924.
- (2000). Plasmid-encoded MucB protein is a DNA polymerase (pol RI) specialized for lesion bypass in the presence of MucA', RecA, and SSB. Proceedings of the National Academy of Sciences of the United States of America. 97:(21)11227-11231.
- (1999). The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA, and SSB and is specialized for translesion replication. Journal of Biological Chemistry. 274:(45)31763-31766.
- (1998). The mutagenesis protein MucB interacts with single strand DNA binding protein and induces a major conformational change in its complex with single- stranded DNA. Journal of Biological Chemistry. 273:(10)5520-5527.
- (1998). The β subunit sliding DNA clamp is responsible for unassisted mutagenic translesion replication by DNA polymerase III holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 95:(24)14106-14111.
- (2023). A Highly Sensitive Flow Cytometric Approach to Detect Rare Antigen-Specific T Cells: Development and Comparison to Standard Monitoring Tools. Cancers. 15:(3)
- (2022). Effective bubble-based testing for SARS-CoV-2 using swab-pooling. Clinical Microbiology and Infection. 28:(6)859-864.
- (2014). Identification of novel DNA-damage tolerance genes reveals regulation of translesion DNA synthesis by nucleophosmin. Nature Communications. 5.
- (2013). Genomic assay reveals tolerance of DNA damage by both translesion DNA synthesis and homology-dependent repair in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 110:(16)E1462-E1469.
- (2012). DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity. Nucleic Acids Research. 40:(1)170-180.
- (2010). Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis. Cell Cycle. 9:(4)729-735.
- (2009). Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals. EMBO Journal. 28:(4)383-393.
- (2009). Repair of gaps opposite lesions by homologous recombination in mammalian cells. Nucleic Acids Research. 37:(17)5737-5748.
- (2008). DNA repair of oxidative DNA damage in human carcinogenesis: Potential application for cancer risk assessment and prevention. Cancer Letters. 266:(1)60-72.
- (2007). Development of an enzymatic DNA repair assay for molecular epidemiology studies: Distribution of OGG activity in healthy individuals. DNA Repair. 6:(1)45-60.
- (2003). DNA repair activity for oxidative damage and risk of lung cancer. Journal of the National Cancer Institute. 95:(17)1312-1319.
- (2003). DNA molecule provides a computing machine with both data and fuel. Proceedings of the National Academy of Sciences of the United States of America. 100:(5)2191-2196.
- (2001). Programmable and autonomous computing machine made of biomolecules. Nature. 414:(6862)430-434.
- (2000). Highly mutagenic replication by DNA polymerase V (UmuC) provides a mechanistic basis for SOS untargeted mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 97:(2)565-570.
- (1999). Direct involvement of p53 in the base excision repair pathway of the DNA repair machinery. FEBS Letters. 450:(3)197-204.
- (2002). Quantitative measurement of translesion replication in human cells: Evidence for bypass of abasic sites by a replicative DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 99:(6)3764-3769.
- (2020). DNA Repair Biomarker for Lung Cancer Risk and its Correlation With Airway Cells Gene Expression. Jnci cancer spectrum. 4:(1)
- (2018). Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability. Genome Biology. 19:(1)
- (2016). High-resolution genomic assays provide insight into the division of labor between TLS and HDR in mammalian replication of damaged DNA. DNA Repair. 44:59-67.
- (2015). DNA lesion identity drives choice of damage tolerance pathway in murine cell chromosomes. Nucleic Acids Research. 43:(3)1637-1645.
- (2014). Enzymatic MPG DNA repair assays for two different oxidative DNA lesions reveal associations with increased lung cancer risk. Carcinogenesis. 35:(12)2763-2770.
- (2005). Evaluation of lesion clustering in irradiated plasmid DNA. International Journal of Radiation Biology. 81:(1)41-54.
- (2003). Lesion bypass DNA polymerases replicate across non-DNA segments. Proceedings of the National Academy of Sciences of the United States of America. 100:(25)14760-14765.
- (2003). Analysis of translesion replication across an abasic site by DNA polymerase IV of Escherichia coli. DNA Repair. 2:(11)1227-1238.
- (2002). Analysis of the stimulation of DNA polymerase V of Escherichia coli by processivity proteins. Biochemistry. 41:(48)14438-14446.
- (1999). Analysis of unassisted translesion replication by the DNA polymerase III holoenzyme. Biochemistry. 38:(18)5948-5958.
- (2006). Reduced repair of the oxidative 8-oxoguanine DNA damage and risk of head and neck cancer. Cancer Research. 66:(24)11683-11689.
- (2005). Interrogating DNA repair in cancer risk assessment. Cancer Epidemiology Biomarkers & Prevention. 14:(7)1585-1587.
- (2002). Efficiency, specificity and DNA polymerase-dependence of translesion replication across the oxidative DNA lesion 8-oxoguanine in human cells. Mutation Research-Fundamental And Molecular Mechanisms Of Mutagenesis. 510:(1-2)81-90.
- (2001). Lesion bypass by the Escherichia coli DNA polymerase V requires assembly of a RecA nucleoprotein filament. Journal of Biological Chemistry. 276:(8)5511-5517.
- (2008). Single-stranded DNA-binding protein recruits DNA polymerase V to primer termini on RecA-coated DNA. Journal of Biological Chemistry. 283:(13)8274-8282.
- (2006). Translesion DNA synthesis across non-DNA segments in cultured human cells. DNA Repair. 5:(4)479-490.
- (1998). UV light induces IS10 transposition in Escherichia coli. Genetics. 149:(3)1173-1181.
Earlier Publications
- (1983). Directed mutagenesis method for analysis of mutagen specificity: application to ultraviolet-induced mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 80:(1)237-241.
- (1982). Recombinational bypass of pyrimidine dimers promoted by the recA protein of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 79:(10)3171-3175.
- (1980). Specific Photoalkylation of Poly u and of Poly a With 2propanol and Their Messenger Properties. Photochemistry and Photobiology. 32:(2)131-135.
- (1994). In vitro UV mutagenesis associated with nucleotide excision-repair gaps in Escherichia coli. Journal of Biological Chemistry. 269:(7)4953-4958.
- (1992). Biochemical analysis of UV mutagenesis in Escherichia coli by using a cell-free reaction coupled to a bioassay: Identification of a DNA repair-dependent, replication-independent pathway. Proceedings of the National Academy of Sciences of the United States of America. 89:(8)3300-3304.
- (1996). β*, a UV-inducible smaller form of the β subunit sliding clamp of DNA polymerase III of Escherichia coli: I. Gene expression and regulation. Journal of Biological Chemistry. 271:(5)2482-2490.
- (1996). Mechanism of translesion DNA synthesis by DNA polymerase II. Comparison to DNA polymerases I and III core. Journal of Biological Chemistry. 271:(40)24662-24669.
- (1996). β*, a UV-inducible Shorter Form of the β Subunit of DNA Polymerase III of Escherichia coli II. OVERPRODUCTION, PURIFICATION, AND ACTIVITY AS A POLYMERASE PROCESSIVITY CLAMP: II. Overproduction, purification, and activity as a polymerase processivity cla. Journal of Biological Chemistry. 271:(5)2491-2496.
- (1995). Intermolecular transposition of IS10 causes coupled homologous recombination at the transposition site. Genetics. 140:(3)861-874.
- (1995). Deamination of Cytosine-containing Pyrimidine Photodimers in UV-irradiated DNA SIGNIFICANCE FOR UV LIGHT MUTAGENESIS: Significance for UV light mutagenesis. Journal of Biological Chemistry. 270:(41)24174-24179.
- (1994). β subunit of DNA polymerase III holoenzyme is induced upon ultraviolet irradiation or nalidixic acid treatment of Escherichia coli. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 308:(1)53-64.
- (1993). Replication of damaged DNA and the molecular mechanism of ultraviolet light mutagenesis. Critical Reviews in Biochemistry and Molecular Biology. 28:(6)465-513.
- (1992). Spontaneous transposition in the bacteriophage λ cro gene residing on a plasmid. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 267:(1)139-151.
- (1992). Overproduction of the β subunit of DNA polymerase III holoenzyme reduces UV mutagenesis in Escherichia coli. Journal of Bacteriology. 174:(8)2517-2524.
- (1989). Rolling-circle replication of UV-irradiated duplex DNA in the ΦX174 replicative-form → single-strand replication system in vitro. Journal of Bacteriology. 171:(6)3530-3538.
- (1989). RecA protein inhibits in vitro replication of single-stranded DNA with DNA polymerase III holoenzyme of Escherichia coli. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 213:(2)165-173.
- (1988). Bypass and termination at apurinic sites during replication of single-stranded DNA in vitro: a model for apurinic site mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 85:(14)5046-5050.
- (1979). Enzymatic insertion of purine bases into depurinated DNA in vitro. Proceedings of the National Academy of Sciences of the United States of America. 76:(3)1089-1093.
- (1979). Endonucleolytic activity directed towards 8-(2-hydroxy-2-propyl) purines in double-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 76:(11)5500-5504.
- (1989). The beta subunit modulates bypass and termination at UV lesions during in vitro replication with DNA polymerase III holoenzyme of Escherichia coli. Journal of Biological Chemistry. 264:(19)11275-11281.
- (1988). The role of exonucleolytic processing and polymerase-DNA association in bypass of lesions during replication in vitro. Significance for SOS-targeted mutagenesis. Journal of Biological Chemistry. 263:(34)18277-18285.
- (1986). Mechanism of replication of ultraviolet-irradiated single-stranded DNA by DNA polymerase III holoenzyme of Escherichia coli. Implications for SOS mutagenesis. Journal of Biological Chemistry. 261:(20)9526-9533.
- (1987). Dynamics of termination during in vitro replication of ultraviolet-irradiated DNA with DNA polymerase III holoenzyme of Escherichia coli. Journal of Biological Chemistry. 262:(22)10518-10523.
- (1996). Reconstitution of repair-gap UV mutagenesis with purified proteins from Escherichia coli: A role for DNA polymerases III and II. Proceedings of the National Academy of Sciences of the United States of America. 93:(4)1376-1380.
- (1996). A smaller form of the sliding clamp subunit of DNA polymerase III is induced by UV irradiation in Escherichia coli. Journal of Biological Chemistry. 271:(5)2478-2481.
- (1997). Anti-mutagenic activity of DNA damage-binding proteins mediated by direct inhibition of translesion replication. Journal of Biological Chemistry. 272:(46)28906-28911.
- (1997). Mechanism of bypass synthesis through an abasic site analog by DNA polymerase I. Biochemistry. 36:(7)1766-1773.