CoSMic - Context Specific MicroRNA analysis

Standalone software 

Windows (64 bit) (version 4.0)

Download CoSMic

Instructions

1. Extract to some folder.
2. Enter to COSMIC folder and launch run.bat (may take a moment).

IMPORTANT NOTE: You should download and install MCR (Matlab Component Runtime) for R2011b (7.13)(unless you already have this version installed).

Linux (version 4.0)

1. Download and extract cosmic_linux_v4_1113.zip to some folder.
   Enter to the folder cosmic_app and verify that those files are executable:
   1. chmod +x cosmic_app
   2. chmod +x  run_cosmic_app.sh
2. If MATLAB 7.12 (2011a) is NOT installed on your computer:
   
   1. Download and install MCRInstaller.bin (Matlab Component Runtime), by typing:
      chmod +x MCRInstaller.bin
./MCRInstaller.bin
   2. From the folder cosmic_app execute the following at the command prompt:
      ./run_cosmic_app.sh <mcr_directory>
      (where <mcr_directory> is the directory where MCR is installed. For example, if you have your MCR installed in: /mathworks/home/application/R2010a/v715,
      run the shell script as: ./run_cosmic_app.sh /mathworks/home/application/R2010a/v715)
3. If MATLAB 7.12 (2011a) is installed on your computer:
   From the folder cosmic_app execute the following at the command prompt:
   ./run_cosmic_app.sh <matlabroot>
   (where <matlabroot> is the directory where MATLAB 7.12 is installed on the machine. For example, if your MATLAB is installed in /mathworks/devel/application/matlab
   Run the shell script as: ./run_cosmic_app.sh /mathworks/devel/application/matlab)

Mac (version 1.0 - older version)

1. Download and extract cosmic_mac_0512.zip to some folder.
   (The software will be extracted into the folder cosmic_app)
2. If MATLAB 7.13 (2011b) is NOT installed on your computer:
   
   1. Download and install MCRInstaller.zip (Matlab Component Runtime).
   2. From the folder cosmic_app execute the following at the command prompt:
      ./run_cosmic_app.sh <mcr_directory>
      (Where <mcr_directory> is the directory where MCR is installed. For example, if you have your MCR installed in: /mathworks/home/application/R2010a/v715,
      run the shell script as: ./run_cosmic_app.sh /mathworks/home/application/R2010a/v715)
3. If MATLAB 7.13 (2011b) is installed on your computer:
   From the folder cosmic_app execute the following at the command prompt:
   ./run_cosmic_app.sh <matlabroot>
   (Where <matlabroot> is the directory where MATLAB 7.13 is installed on the machine. For example, if your MATLAB is installed in /mathworks/devel/application/matlab
   Run the shell script as: ./run_cosmic_app.sh /mathworks/devel/application/matlab)

For support please contact Assif Yitzhaky.