CoSMic - Context Specific MicroRNA analysis

Description: Description: Description: Description: Description: \\complex1\data1\feassif\Noa\cosmic\site\image002.jpg

Standalone software 

Windows (64 bit) (version 4.0)

Download CoSMic

Instructions

  1. Extract to some folder.
  2. Enter to COSMIC folder and launch run.bat (may take a moment).

IMPORTANT NOTE: You should download and install MCR (Matlab Component Runtime) for R2011b (7.13)(unless you already have this version installed).

 

Linux (version 4.0)

  1. Download and extract cosmic_linux_v4_1113.zip to some folder.
    Enter to the folder cosmic_app and verify that those files are executable:
    1. chmod +x cosmic_app
    2. chmod +x  run_cosmic_app.sh
  2. If MATLAB 7.12 (2011a) is NOT installed on your computer:
    1. Download and install MCRInstaller.bin (Matlab Component Runtime), by typing:
      chmod +x MCRInstaller.bin
      ./MCRInstaller.bin
    2. From the folder cosmic_app execute the following at the command prompt:
      ./run_cosmic_app.sh <mcr_directory>
      (where <mcr_directory> is the directory where MCR is installed. For example, if you have your MCR installed in: /mathworks/home/application/R2010a/v715,
      run the shell script as: ./run_cosmic_app.sh /mathworks/home/application/R2010a/v715)
  3. If MATLAB 7.12 (2011a) is installed on your computer:
    From the folder cosmic_app execute the following at the command prompt:
    ./run_cosmic_app.sh <matlabroot>
    (where <matlabroot> is the directory where MATLAB 7.12 is installed on the machine. For example, if your MATLAB is installed in /mathworks/devel/application/matlab
    Run the shell script as: ./run_cosmic_app.sh /mathworks/devel/application/matlab)

 

Mac (version 1.0 - older version)

  1. Download and extract cosmic_mac_0512.zip to some folder.
    (The software will be extracted into the folder cosmic_app)
  2. If MATLAB 7.13 (2011b) is NOT installed on your computer:
    1. Download and install MCRInstaller.zip (Matlab Component Runtime).
    2. From the folder cosmic_app execute the following at the command prompt:
      ./run_cosmic_app.sh <mcr_directory>
      (Where <mcr_directory> is the directory where MCR is installed. For example, if you have your MCR installed in: /mathworks/home/application/R2010a/v715,
      run the shell script as: ./run_cosmic_app.sh /mathworks/home/application/R2010a/v715)
  3. If MATLAB 7.13 (2011b) is installed on your computer:
    From the folder cosmic_app execute the following at the command prompt:
    ./run_cosmic_app.sh <matlabroot>
    (Where <matlabroot> is the directory where MATLAB 7.13 is installed on the machine. For example, if your MATLAB is installed in /mathworks/devel/application/matlab
    Run the shell script as: ./run_cosmic_app.sh /mathworks/devel/application/matlab)

 

For support please contact Assif Yitzhaky.