Bioinformatics: LSCF Publications

  1. Shemi A., Ben-Dor S., Rotkopf R., Dym O. & Vardi A. (2023). Phylogeny and biogeography of the algal DMS-releasing enzyme in the global ocean.  ISME Communications. 2023 Jul 14 , 3 .
  2. Givony T., Leshkowitz D., Del Castillo D., Nevo S., Kadouri N., Dassa B., Gruper Y., Khalaila R., Ben-Nun O., Gome T., Dobeš J., Ben-Dor S., Kedmi M., Keren-Shaul H., Heffner-Krausz R., Porat Z., Golani O., Addadi Y., Brenner O., Lo D. D., Goldfarb Y. & Abramson J. (2023). Thymic mimetic cells function beyond self-tolerance.  Nature. 2023 Oct 5 , 622 (7981):164–172.
  3. Haque R., Kurien S. P., Setty H., Salzberg Y., Stelzer G., Litvak E., Gingold H., Rechavi O. & Oren-Suissa M. (2023). Sex-Specific Developmental Gene Expression Atlas Unveils Dimorphic Gene Networks in C. elegans.  BioRxiv. 2023 Aug 6 , .
  4. Shemi A., Ben-Dor S., Rotkopf R., Dym O. & Vardi A. (2023). Phylogeny and biogeography of the algal DMS-releasing enzyme in the global ocean.  ISME Communications. 2023 Jul 14 , 3 .
  5. Danino Y. M., Molitor L., Rosenbaum-Cohen T., Kaiser S., Cohen Y., Porat Z., Marmor-Kollet H., Katina C., Savidor A., Rotkopf R., Ben-Isaac E., Golani O., Levin Y., Monchaud D., Hickson I. D. & Hornstein E. (2023). BLM helicase protein negatively regulates stress granule formation through unwinding RNA G-quadruplex structures.  Nucleic Acids Research. 2023 Sept 22 , 51 (17):9369-9384.
  6. Dey S., Barkai O., Gokhman I., Suissa S., Haffner-Krausz R., Wigoda N., Feldmesser E., Ben-Dor S., Kovalenko A., Binshtok A. & Yaron A. (2023). Kinesin family member 2A gates nociception.  Cell Reports. 2023 Oct 31 , 42 (10).
  7. de Haan D., Aram L., Peled-Zehavi H., Addadi Y., Ben-Joseph O., Rotkopf R., Elad N., Rechav K. & Gal A. (2023). Exocytosis of the silicified cell wall of diatoms involves extensive membrane disintegration.  Nature Communications. 2023 Jan 30 , 14 .
  8. Levi N., Papismadov N., Majewska J., Roitman L., Wigoda N., Eilam R., Tsoory M., Rotkopf R., Ovadya Y., Akiva H., Regev O. & Krizhanovsky V. (2023). p21 facilitates chronic lung inflammation via epithelial and endothelial cells.  Aging (Albany, NY.). 2023 Apr 15 , 15 (7):2395-2417.
  9. Sapoznikov A., Kozlovski S., Levi N., Feigelson S. W., Regev O., Davidzohn N., Ben-Dor S., Haffner-Krausz R., Feldmesser E., Wigoda N., Petrovich-Kopitman E., Biton M. & Alon R. (2023). Dendritic cell ICAM-1 strengthens synapses with CD8 T cells but is not required for their early differentiation.  Cell Reports. 2023 Aug 29 , 42 (8).
  10. Azuri I., Wattad A., Peri-Hanania K., Kashti T., Rosen R., Caspi Y., Istaiti M., Wattad M., Applbaum Y., Zimran A., Revel-Vilk S. & C. Eldar Y. (2023). A Deep-Learning Approach to Spleen Volume Estimation in Patients with Gaucher Disease.  Journal of Clinical Medicine. 2023 Aug , 12 (16).
  11. Dey S., Barkai O., Gokhman I., Suissa S., Haffner-Krausz R., Wigoda N., Feldmesser E., Ben-Dor S., Kovalenko A., Binshtok A. & Yaron A. (2023). Kinesin family member 2A gates nociception.  Cell Reports. 2023 Oct 31 , 42 (10).
  12. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb , 12 .
  13. Levi N., Papismadov N., Majewska J., Roitman L., Wigoda N., Eilam R., Tsoory M., Rotkopf R., Ovadya Y., Akiva H., Regev O. & Krizhanovsky V. (2023). p21 facilitates chronic lung inflammation via epithelial and endothelial cells.  Aging (Albany, NY.). 2023 Apr 15 , 15 (7):2395-2417.
  14. Sapoznikov A., Kozlovski S., Levi N., Feigelson S. W., Regev O., Davidzohn N., Ben-Dor S., Haffner-Krausz R., Feldmesser E., Wigoda N., Petrovich-Kopitman E., Biton M. & Alon R. (2023). Dendritic cell ICAM-1 strengthens synapses with CD8 T cells but is not required for their early differentiation.  Cell Reports. 2023 Aug 29 , 42 (8).
  15. Bigelman E., Pasmanik-Chor M., Dassa B., Itkin M., Malitsky S., Dorot O., Pichinuk E., Kleinberg Y., Keren G. & Entin-Meer M. (2023). Kynurenic acid, a key L-tryptophan-derived metabolite, protects the heart from an ischemic damage.  PLoS ONE. 2023 Aug 24 , 18 (8).
  16. Chen Q., Leshkowitz D., Li H., van Impel A., Schulte-Merker S., Amit I., Rizzoti K. & Levkowitz G. (2023). Neural plate progenitors give rise to both anterior and posterior pituitary cells.  Developmental Cell. 2023 Dec 4 , 58 (23):2652-2665.e6.
  17. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb , 12 .
  18. Abada Manelis A., Beiralas R., Narvaez D., Sperfeld M., Duchin Rapp Y., Lipsman V., Yuda L., Cohen B., Carmieli R., Ben-Dor S., Rocha J., Zhang I. H., Babbin A. R. & Segev E. (2023). Aerobic bacteria produce nitric oxide via denitrification and promote algal population collapse.  The ISME Journal. 2023 Aug , 17 (8):1167-1183.
  19. Swaminathan A., Gliksberg M., Anbalagan S., Wigoda N. & Levkowitz G. (2023). Stress resilience is established during development and is regulated by complement factors.  Cell Reports. 2023 Jan 31 , 42 (1).
  20. Fox H., Ben-Dor S., Doron-Faigenboim A., Goldsmith M., Klein T. & David-Schwartz R. (2023). Carbohydrate dynamics in Populus trees under drought: An expression atlas of genes related to sensing, translocation, and metabolism across organs.  Physiologia Plantarum. 2023 Sept , 175 (5).