Bioinformatics: LSCF Publications

  1. Mestre B., Zelnik I. D., Izrailov S., Dingjan T., Lvovsky G., Fidel L., Ben-Dor S. & Futerman A. H. (2025). An anomalous abundance of tryptophan residues in ceramide synthases based on analysis of all membrane proteins in the Swiss-Prot database.  Journal of Biological Chemistry. 2025 Jan , 301 (1).
  2. Lindner J., Dassa B., Wigoda N., Stelzer G., Feldmesser E., Prilusky J. & Leshkowitz D. (2025). UTAP2: an enhanced user-friendly transcriptome and epigenome analysis pipeline.  BMC Bioinformatics. 2025 Mar 7 , 26 .
  3. Chourasia S., Petucci C., Shoffler C., Abbasian D., Wang H., Han X., Sivan E., Brandis A., Mehlman T., Malitsky S., Itkin M., Sharp A., Rotkopf R., Dassa B., Regev L., Zaltsman Y. & Gross A. (2025). MTCH2 controls energy demand and expenditure to fuel anabolism during adipogenesis.  EMBO Journal. 2025 Jan 3 , .
  4. Furth N., Cohen N., Spitzer A., Salame T. M., Dassa B., Mehlman T., Brandis A., Moussaieff A., Friedmann-Morvinski D., Castro M. G., Fortin J., Suvà M. L., Tirosh I., Erez A., Ron G. & Shema E. (2025). Oncogenic IDH1mut drives robust loss of histone acetylation and increases chromatin heterogeneity.  Proceedings of the National Academy of Sciences - PNAS. 2025 Jan 7 , 122 (1).
  5. Shpitzen S., Rosen H., Ben-Zvi A., Meir K., Levin G., Gudgold A., Ben Dor S., Haffner R., Zwas D. R., Leibowitz D., Slaugenhaupt S. A., Banin E., Mizrachi R., Obolensky A., Levine R. A., Gilon D., Leitersdorf E., Tessler I., Reshef N. & Durst R. (2025). Characterization of LTBP2 mutation causing mitral valve prolapse.  European Heart Journal Open. 2025 Jan 1 , 5 (1).
  6. Leushkin Y., Morgenstern D., Ben-Dor S., Haffner-Krausz R., Zittlau K., Ben-Nissan G. & Sharon M. (2025). Molecular insights into the unique properties of the blood-circulating proteasome.  Journal of Extracellular Biology. 2025 Jan , 4 (1).
  7. Alfandari D., Rosenhek-Goldian I., Kozela E., Nevo R., Senprún M. B., Moisieiev A., Sogauker N., Azuri I., Gelman S., Kiper E., Ben Hur D., Dharan R., Sorkin R., Porat Z., Morandi M. I. & Regev-Rudzki N. (2025). Host Immune Cell Membrane Deformability Governs the Uptake Route of Malaria-Derived Extracellular Vesicles.  ACS Nano. 2025 Mar 18 , 19 (10):9760-9778.
  8. Yahalom-Ronen Y., Melamed S., Politi B., Erez N., Tamir H., Bar-On L., Ryvkin J., Leshkowitz D., Israeli O., Weiss S., Ben-Shmuel A., Barlev-Gross M., Cherry Mimran L., Achdout H., Paran N. & Israely T. (2024). Induction of Superior Systemic and Mucosal Protective Immunity to SARS-CoV-2 by Nasal Administration of a VSVΔGSpike Vaccine.  Vaccines. 2024 May , 12 (5).
  9. Yado S., Dassa B., Zoabi R., Reich-Zeliger S., Friedman N. & Geiger B. (2024). Molecular mechanisms underlying the modulation of T-cell proliferation and cytotoxicity by immobilized CCL21 and ICAM1.  Journal for ImmunoTherapy of Cancer. 2024 Jun 12 , 12 (6).
  10. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  11. Arbel-Goren R., Dassa B., Zhitnitsky A., Valladares A., Herrero A., Flores E. & Stavans J. (2024). Spatio-temporal coherence of circadian clocks and temporal control of differentiation in Anabaena filaments.  mSystems. 2024 Jan 23 , 9 (1).
  12. Stroganov S., Harris T., Alyagor L., Ben Moyal L., Plitman Mayo R., Golani O., Hirsch D., Ben-Dor S., Brandis A., Mehlman T., Kovo M., Biron-Shental T., Dekel N. & Neeman M. (2024). The differential regulation of placenta trophoblast bisphosphoglycerate mutase in fetal growth restriction: preclinical study in mice and observational histological study of human placenta.  eLife. 2024 Feb 5 , 13 .
  13. Sekeresova K. J., Lena F., Catalina D., Shifra B. & Steffen J. (2024). Draft genome of Kazachstania heterogenica var. weizmannii, a commensal fungus of the mouse digestive tract.  Microbiology Resource Announcements. 2024 Apr , 13 (4).