Publications

S. Farberov, O. Ziv,  J.Y. Lau, R. Ben-Tov Perry, Y. Lubelsky, E. Miska, G. Kudla and I. Ulitsky. Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity. Nature Structural and Molecular Biology (2024)

S. Farberov and I. Ulitsky. Systematic analysis of the target recognition and repression by the Pumilio proteins. Nucleic Acids Research, In revision. bioRxiv (2024)

L.Q.J. Lim, L. Adler, E. Hajaj, L.R. Soria, R. Ben-Tov Perry, N. Darzi, R. Brody, N. Furth, M. Lichtenstein, E. Bab-Dinitz, Z. Porat, T. Melman, A. Brandis, S. Malitsky, M. Itkin, Y. Aylon, S. Ben-Dor, I. Orr, A. Pri-Or, R. Seger, Y. Shaul, E. Ruppin, M. Oren, M. Perez, J. Meier, N. Brunetti-Pierri, E. Shema, I. Ulitsky and A. Erez. ASS1 metabolically contributes to the nuclear and cytosolic p53-mediated DNA damage response. Nature Metabolism 6, 1294–1309 (2024)
 

N. von Kuegelgen, K. Ludwik, S. Mendonsa, C. Roemer, E. Becher, L. Breimann, M. Strauch, T. Mari, S. Mongellaz, N. Grexa, A. Oliveras-Martinez, A. Woehler, M. Selbach, V. la Bella, I. Ulitsky, M. Chekulaeva. Neuromuscular dysfunction in patient-derived FUSR244RR-ALS iPSC model via axonal downregulation of neuromuscular junction proteins. bioRxiv (2024)

H. Dunn-Davies, T. Dudnakova, A. Nogara, J. Rodor, A.C. Thomas, E. Parish, P. Gautier,  A.  Meynert, I. Ulitsky, P. Madeddu, A. Caporali, A. Baker, D. Tollervey, T. Mitic. . Molecular Therapy Nucleic Acids. 35(2): 102173 (2024). 

J. Mattick, P. Amaral, P. Carninci, S. Carpenter, H. Chang, L.L. Chen, R. Chen, C. Dean, M. Dinger, K. Fitzgerald, T. Gingeras, M. Guttman, T. Hirose, M. Huarte, R. Johnson, C. Kanduri, P. Kapranov, J. Lawrence, J. Lee, J. Mendell, T. Mercer, K. Moore, S. Nakagawa, J. Rinn, D. Spector, I. Ulitsky, Y. Wan, J. Wilusz and M. Wu. Nature Reviews Molecular Cell Biology. 24(6):430-447 (2023)

A. Monziani and I. Ulitsky. Trends in Genetics. 39(12):908-923 (2023)

T. Rapakoulia, S.L. Ruiz De Vargas, P.A. Omgba, V. Laupert, I. Ulitsky and M. Vingron. Bioinformatics. 39(11):btad687

P. Amaral, S. Carbonell-Sala, F.N. Vega, T. Faial, A. Frankish, T. Gingeras, R. Guigo, J.L. Harrow, A.G Hatzigeorgiou, R. Johnson, T.D. Murphy, M. Pertea, K.D. Pruitt, S. Pujar, H. Takahashi, I. Ulitsky, A. Varabyou, C.A. Wells, M. Yandell, P. Carninci and S.L. Salzberg. Nature. 622(7981):41-47 (2023)

R. Ben-Tov Perry, M. Tsoory, M. Tolmasov and I. Ulitsky. Cell Reports 42(10):113168 (2023) 

M.I. Rosenberg, E. Greenstein, M. Buchkovich, M. Mikl, A. Peres, E. Santoni-Rugiu, D. Reshef, A. Salovin, D.L. Gibbs, M.S. Irwin, A. Naranjo, I. Ulitsky, P.A. de Alarcon, V. Weigman, G. Yaari, J.A. Panzer, N. Friedman, J. Maris. Cell Reports. 42(8):112879 (2023).  

N. Gil, R. Ben-Tov Perry, A. Tuck, M. Buhler and I. Ulitsky. Cell Reports. 42(6):112569 (2023)

T. Braun, K.E. Sosnovski, A. Amir, M. BenShoshan, K.L. VanDussen, R. Karns, N. Levhar, H. Abbas-Egbariya, R. Hadar, G. Efroni, D. Castel, C. Avivi, M.J. Rosen, A.M. Grifiths, T.D. Walters, D.R. Mack, B.M. Boyle, S. Asad Ali, S. R. Moore, M. Schirmer, R.J. Xavier, S. Kugathasan, A.G. Jegga, B. Weiss, C. Mayer, I. Barshack, S. Ben-Horin, I. Ulitsky, A. Beucher, J. Ferrer, J.S. Hyams, L.A. Denson, and Y. Haberman. JCI Insight. 8(14):e170181 (2023)

A. Kshirsagar, S.N. Doroshev, A. Gorelik, T. Olender, T. Sapir, D. Tsuboi, I. Rosenhek-Goldian, S. Malitsky, M. Itkin, A. Argoetti, Y. Mandel-Gutfreund, S.R. Cohen, J. Hanna, I. Ulitsky, K. Kaibuchi and O.Reiner. Nature Communications. 14(1):3293 (2023) 

M. Stark, M. Levin, I. Ulitsky and Y. Assaraf. BMC Biology. 21(1):13 (2023)

S. Mendonsa*, N. von Kügelgen*, S. Dantsuji*, M. Ron*, L. Breimann,  A. Baranovskii, I. Lödige, M. Kirchner, M. Fischer, N. Zerna, L. Bujanic, P. Mertins, I. Ulitsky^# and M Chekulaeva^#. Nature Neuroscience. 26(3):394-405 (2023) (* - equal contribution, # - co-corresponding authors)

K.E. Sosnovski, T. Braun, A. Amir, D. Moshel, M. BenShoshan, K.L. VanDussen, N. Levhar, H. Abbas-Egbariya, K. Beider, R. Ben-Yishay, S. Asad Ali, S.R. Moore, S. Kugathasan, I. Abramovich, E.G. Saar, B. Weiss, I. Barshack, E. Gottlieb, T. Geiger, S. Ben-Horin, I. Ulitsky, J.S. Hyams, L.A. Denson and Y. Haberman. Journal of Crohn’s and Colitis. 17(6):960-971 (2023)

D. Michael, E. Feldmesser, C. Gonen, N. Furth, A. Maman, O. Heyman, A. Argoetti, A. Tofield, A. Baichman-Kass, A. Ben-Dov, D. Benbenisti, N. Chen, R. Rotkopf, F. Ganci, G. Blandino, I. Ulitsky, and M. Oren, FEBS Reports. 597(9):1233-1245 (2023)

N. Degani, Y. Lubelsky, R. Ben-Tov Perry,  E. Ainbinder and I. Ulitsky, Jul 2021, PLoS Genetics. 17, 7, p. e1009681

Y. Lubelsky, B. Zuckerman and I. Ulitsky, May 2021, The EMBO Journal. 40:e106357

I. Herold, A. Zolti, M. Garduno-Rosales, Z. Wang, F. Lopez-Giraldez, R. Mouriño-Pérez, J. Townsend, I. Ulitsky and O. Yarden, May 2021, Frontiers in Fungal Biology, section Fungal Physiology and Metabolism.

R. L. Mather, A. Parolia, E. Venalainen, S.C. Cho, S. Carson, D.R. Carles, I. Alborelli, D. Lin, E. Jachetti, M.P. Colombo, H. Xue, P. Pucci, X. Ci, C. Hawkes, H. Pandha, I. Ulitsky, C.N. Marconett, L. Quagliata, W. Jiang, I. Romero, Y. Wang and F. Crea, Apr 2021, Molecular Oncology.

J. Monteiro, J. Rodor, A. Caudrillier, J.P. Scanlon, A.M. Spiroski, T. Dudnakova, B. Pflüger-Müller, A. Shmakova, A. von Kriegsheim, L., R.S. Taylor, J.R. Wilson-Kanamori, S.H. Chen, K. Stewart, A. Thomson, T. Mitić, J.D. McClure, J. Iyinikkel, P.W. Hadoke, L. Denby, A.C. Bradshaw, O. Caruso, N.W. Morrell, J.C. Kovacic, I. Ulitsky, N. Henderson, A. Caporali, M.S. Leisegang, R.P. Brandes and A.H. Baker. , Mar 2021, Circulation Research. 8, 128, p. 1173-1190

M. Bennett, I. Ulitsky, I. Alloza, K. Vandenbroeck, V. Miscianinov, A.D. Mahmoud, M. Ballantyne, J. Rodor and A.H. Baker, Feb 2021, International Journal of Molecular Science. 3, 22, p. 1484

C.J. Ross, A. Rom, A. Spinrad, D. Gelbard Solodkin, N. Degani and I. Ulitsky, Dec 2020, Genome Biology. 1, 22, p. 29

S. Zagorac, A.de Giorgio, M. Kalisz, A.Dabrowska, M. Kalisz, N. Casas-Vila, P. Cathcart, A. Yiu, S. Ottaviani, N. Degani, Y. Lombardo, A. Tweedie, T. Nissan, K.W. Vance, I. Ulitsky, J. Stebbing and L. Castellano. Nov 2020, Cancer Research. 3, 81, p. 580-593

T. Koffler-Brill, S. Taiber, A. Anaya, M. Bordeynik-Cohen, E. Rosen, L. Kolla, M.W. Kelley, I. Ulitsky and K.B. Avraham, Sep 2020, RNA Biology. Nov 1, p. 1-10

J.A. Ramilowski, C.W. Yip, S. Agrawal, J.C. Chang, Y. Ciani, I.V. Kulakovskiy, M. Mendez, J.L.C. Ooi, J.F. Ouyang, N. Parkinson, A. Petri, L. Roos, J. Severin, K. Yasuzawa, I. Abugessaisa, A. Akalin, I.V. Antonov, E. Arner, A. Bonetti, H. Bono, B. Borsari, F. Brombacher, C.J.F. Cameron, C. Vittorio Cannistraci, R. Cardenas, M. Cardon, H. Chang, J. Dostie, L. Ducoli, A. Favorov, A. Fort, D. Garrido, N. Gil, J. Gimenez, R. Guler, L. Handoko, J. Harshbarger, A. Hasegawa, Y. Hasegawa, K. Hashimoto, N. Hayatsu, P. Heutink, T. Hirose, E.L. Imada, M. Itoh, B. Kaczkowski, A. Kanhere, E. Kawabata, H. Kawaji, T. Kawashima, S.T. Kelly, M. Kojima, N. Kondo, H. Koseki, T. Kouno, A. Kratz, M. Kurowska-Stolarska, A. Tae Jun Kwon, J. Leek, A. Lennartsson, M. Lizio, F. López-Redondo, J. Luginbühl, S. Maeda, V.J. Makeev, L. Marchionni, Y.A. Medvedeva, A. Minoda, F. Müller, M. Muñoz-Aguirre, M. Murata, H. Nishiyori, K.R. Nitta, S. Noguchi, Y. Noro, R. Nurtdinov, Y. Okazaki, V. Orlando, D. Paquette, C.J.C. Parr, O.J.L. Rackham, P. Rizzu, D. Fernando Sánchez Martinez, A. Sandelin, P. Sanjana, C.A.M. Semple, Y. Shibayama, D.M. Sivaraman, T. Suzuki, S.C. Szumowski, M. Tagami, M.S. Taylor, C. Terao, M. Thodberg, S. Thongjuea, V. Tripathi, I. Ulitsky, R. Verardo, I.E. Vorontsov, C. Yamamoto, R.S. Young39, J.K. Baillie, A.R.R. Forrest, R. Guigó, M.M. Hoffman, C.C. Hon, T. Kasukawa, S. Kauppinen, J. Kere, B. Lenhard, C. Schneider, H. Suzuki, K. Yagi, M.J.L. de Hoon, J.W. Shin and P. Carninci, Jul 2020, Genome Research. 30(7):1060-1072

B. Zuckerman, M. Ron, M. Mikl, E. Segal and I. Ulitsky, Jun 2020, Molecular Cell. 79, 2, p. 251-267.e6

B. Slobodin, A. Bahat, U. Sehrawat, S. Becker-Herman, B. Zuckerman, A.N. Weiss, R. Han, R. Elkon, R. Agami, I. Ulitsky, I. Shachar, R. Dikstein., Apr 2020, Molecular Cell. 78, 3, p. 434-444.e5

R.L. Seal, L.L. Chen, S. Griffiths‐Jones, T.M. Lowe, M.B. Mathews, D. O'Reilly, A.J. Pierce, P.F. Stadler, I. Ulitsky, S.L. Wolin and E.A. Bruford. A guide to naming human non‐coding RNA genes. , Mar 2020, The EMBO Journal. 39, 6, p. e103777

N. Gil and I. Ulitsky, Feb 2020, Nature Reviews Genetics. 21, 2, p. 102-117

M. Pradas-Juni, N. R. Hansmeier, J.C. Link, E. Schmidt, B.D. Larsen, P. Klemm, N. Meola, H. Topel, R. Loureiro, I. Dhaouadi, C.A. Kiefer, R. Schwarzer, S. Khani, M. Oliverio, M. Awazawa, P. Frommolt, J. Heeren, L. Scheja, M. Heine, C. Dieterich, H. Büning, L. Yang, H. Cao, D. F. De Jesus, R.N. Kulkarni, Branko Zevnik, S.E. Tröder, U. Knippschild, P.A. Edwards, R.G. Lee, M. Yamamoto, I. Ulitsky, E. Fernandez-Rebollo, T.Q. de Aguiar Vallim and J.W. Kornfeld, Jan 2020, Nature Communications. 11, p. 644

H. Hezroni, R. Ben Tov Perry and I. Ulitsky, Jan 2020, Cold Spring Harbor Symposia on Quantitative Biology. 84:165-177

A. Graindorge, I. Pinheiro, A. Mallory , P. Tsvetkov , N. Gil, C. Carolis, F. Buchholz, I. Ulitsky, E. Heard, M. Taipale and A. Shkumatava, Nov 2019, Nature Communications. 10, 1, p. 5317

A. Rom, L. Melamed, N. Gil, M. Goldrich, R. Kadir, M. Golan, I. Biton, R. Ben-Tov Perry and I. Ulitsky. , Nov 2019, Nature Communications. 10, 1, p. 5092

J.P. Monteiro, M. Bennett, J. Rodor, A. Caudrillier, I. Ulitsky, and A.H. Baker., Oct 2019, Cardiovascular Research. 115, 12, p. 1692-1704

49. A.D. Mahmoud, M.D. Ballantyne, V. Miscianinov, K. Pinel, J. Hung, J. Scanlon, J. Iyinikkel, J. Kaczynski, A.S. Tavares, A.C. Bradshaw, N.L. Mills, D.E. Newby, A. Caporali, G. W. Gould, S.J. George, I. Ulitsky, J.C. Slumier, J. Rodor and A.H. Baker., Jul 2019, Circulation Research. 125, 5, p. 525-551

T.A. Hait, A. Maron-Katz, D. Sagir, D. Amar, I. Ulitsky, C. Linhart, R. Sharan, Y. Shiloh, R. Elkon and R. Shamir, Jun 2019, Journal of Molecular Biology. 431, 13, p. 2398-2406

F. Carvalhal Marques and I. Ulitsky, Apr 2019, eLife. 8, p. e45974

C. Ciolli Mattioli, A. Rom, V. Franke, K. Imami, G. Tane, M. Terne; A. Woehler, A. Akalin, I. Ulitsky and M. Chekulaeva. , Mar 2019, Nucleic Acids Research. 47, 5, p. 2560-2573

B. Zuckerman and I. Ulitsky, Feb 2019, RNA. 25, 5, p. 557-572

A. Silberman, O. Goldman, O. Boukobza Assayag, A. Jacob, S. Limanovich, L. Adler, J.S. Lee, R. Keshet, A. Sarver, J. Frug, N. Stettner, S. Galai, E. Persi, K. Bahar Halpern, Y. Zaltsman-Amir, B. Pode-Shakked, R. Eilam, Y. Anikster, S.C.S. Nagamani, I. Ulitsky, E. Ruppin and A. Erez, Dec 2018, Cancer Research. 79 (3): 518–533

R. Ben-Tov Perry, H. Hezroni, M.J. Goldrich and I. Ulitsky, Oct 2018, Molecular Cell. 72, 3, p. 553-567.E5

V. Agarwal, A.O. Subtelny, O. Thiru, I. Ulitsky and D.P. Bartel, Sep 2018, Genome Biology. 19, 1, p. 19(1):152

N. Gil and I. Ulitsky, Jun 2018, Cell Systems. 7, 5, p. 537-547

S. Arandkar, N. Furth, Y. Elisha, N.B. Nataraj, H. van der Kuip, Y. Yarden, W. Aulitzky, I. Ulitsky, B. Geiger and M. Oren, Jun 2018, PNAS. 115, 25, p. 6410-6415

Ulitsky, I, May 2018, FEBS Letters. 592: 2874-2883

Z. Haimon, A. Volasky, J. Orthgiess, S. Boura-Halfon, D. Varol, A. Shemer, S. Yona, B. Zuckerman, E. David, L. Chappell-Maor, I. Bechmann, M. Gericke, I. Ulitsky and S. Jung, 2018, Nature Immunology. 19, 6, p. 636-644

Y. Lubelsky and I. Ulitsky, Mar 2018, Nature. 555, 7694, p. 107-111

A. Tichon, R. Ben-Tov Perry, L. Stojic and I. Ulitsky, Jan 2018, Genes & Development. 32, 1, p. 70-78

H. Hezroni, R. Ben-Tov Perry, Z. Meir, G. Housman, Y. Lubelsky and I. Ulitsky, I, Feb 2017, Genome Biology. 18, p. 162

O. Marín-Béjar, A.M. Mas, J. González, D. Martinez, A. Athie, X. Morales, M.Galduroz, I. Raimondi, E. Grossi, S. Guo, A. Rouzaut, I. Ulitsky and M. Huarte, Feb 2017, Genome Biology. 18, 1, p. 202

O. Haimov, H. Sinvani, F. Martin, I. Ulitsky, R. Emmanuel, A. Tamarkin-Ben-Harush, A. Vardy and R. Dikstein, Feb 2017, Molecular and Cellular Biology. 37

K. Ushakov, T. Koffler-Brill, A. Rom, K. Perl, I. Ulitsky and K.B. Avraham, KB, Feb 2017, Scientific Reports. 7

G. Housman and I. Ulitsky, Feb 2016, BBA - Gene Regulatory Mechanisms. 1859, p. 31-40

A. Tichon, N. Gil, Y. Lubelsky, T. Havkin Solomon, D. Lemze, S. Itzkovitz, N. Stern-Ginossar and I. Ulitsky, Feb 2016, Nature communications. 7

A. Sas-Chen, M.R. Aure, L. Leibovich, … , I. Ulitsky, S. Diederichs, S. Wiemann, Z. Yakhini, V.N. Kristensen, A.L. Børresen-Dale and Y. Yarden, Feb 2016, EMBO Molecular Medicine. 8,

Ulitsky, I, Feb 2016, Nature Reviews Genetics. 17, p. 601-614

S. Rabinovich, L. Adler, K. Yizhak, A. Sarver, A. Silberman, S. Agron, N. Stettner, Q. Sun, A. Brandis, D. Helbling, S. Korman, S. Itzkovitz, D. Dimmock, I. Ulitsky, S.C.S Nagamani, E. Ruppin and A. Erez, Feb 2015, Nature. 527, p. 379

H. Hezroni, D. Koppstein, M.G. Schwartz, A. Avrutin, D.P. Bartel and I. Ulitsky, Feb 2015, Cell Reports. 11, p. 1110-1122

R. Arafeh, N. Qutob, R. Emmanuel, … , I. Ulitsky, G.J. Mann, R.A. Scolyer, N.K. Hayward and Y. Samuels, Feb 2015, Nature Genetics. 47, p. 1408

I. Ulitsky and D.P. Bartel, Feb 2013, Cell. 154, p. 26-46

I. Ulitsky*, A. Shkumatava*, C. Jan, H. Sive and D.P. Bartel, DP, Feb 2011, Cell. 147, p. 1537-1550

T. Elkan-Miller, I. Ulitsky, R. Hertzano, A. Rudnicki, A.A. Dror, D.R. Lenz, R. Elkon, M. Irmler, J. Beckers, R. Shamir and K.B. Avraham, Feb 2011, PLoS One. 6,

I. Ulitsky, N.J. Krogan and R. Shamir, Feb 2009, Genome Biology. 10,

Y. Halperin, C. Linhart, I. Ulitsky and R. Shamir, Feb 2009, Nucleic Acids Research. 37, p. 1566-1579

I. Ulitsky, T. Shlomi, M. Kupiec and R. Shamir, Feb 2008, Molecular Systems Biology. 4,

D. Burstein, I. Ulitsky, T. Tuller and B. Chor, Feb 2005, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 3500, p. 283-295